Abstract:Co-infection is a common phenomenon in nature, and large-scale morbidity in livestock farms is caused by multiple pathogenic factors, with pathogen co-infection being a major contributor. Co-infection complicates clinical diagnosis and treatment. However, most studies focus solely on the pathogenic characteristics and mechanisms of single pathogens, and many prevention and control methods and drug treatment strategies are also limited to a single pathogens. Consequently, these methods are often ineffective against co-infections involving multiple pathogens. In fact, co-infection can cause more severe symptoms and damage to the host compared to single-pathogen infections. Moreover, interactions between co-infected pathogens can be synergistic, antagonistic, or non-interfering, and they may alter the pathogenic mechanisms of the original single pathogens. Therefore, developing rapid, sensitive, and efficient detection methods for multiple pathogens and exploring the pathogenesis of co-infection are of great significance for the prevention and treatment of co-infection. Pathogen co-infection has been extensively studied in livestock and poultry, including the detection technology and pathogenic mechanisms of virus-virus, virus-bacteria, and bacteria-bacteria co-infections. However, co-infection in aquaculture remains underexplored, with few studies reported. Grouper is a highly valued marine fish, known for its delicate and nutritious meat and significant economic importance. With the expansion of aquaculture and increaing industrialization and urbanization, the deterioration of the offshore grouper aquaculture environment has intensified, leading to more severe disease outbreaks in grouper populations. To understand the characteristics and patterns of common pathogen infections in cultured grouper, this study used PCR to investigate viral and bacterial pathogens in diseased grouper collected from farms in Guangxi (Beihai, Qinzhou, Fangchenggang City) for the first time. Pathogens were isolated using cell-specific isolation methods for viral pathogens and plate (LB and TCBS) streak separation for bacterial pathogens. The infectivity of the isolated pathogens was then confirmed using grouper cell lines. Results showed that Singapore grouper iridovirus (SGIV), nervous necrosis virus (NNV), Vibrio harveyi, V. vulnificus, V. alginolyticus, V. parahaemolyticus, A. eromonas hydrophila and Photobacterium damselaesingle were detected grouper singly or in combination. V. harveyi, V. vulnificus, V. alginolyticus and V. parahaemolyticus were the primary bacterial pathogens infecting cultured grouper in Guangxi, and interspecies and intraspecies co-infections observed. The detection frequency of V. harveyi was the highest, indicating that it is the main causative agent of Vibrio disease in cultured grouper in Guangxi. Detection rates of viral and bacterial pathogens veried significantly by season. The detection rate of NNV was 13% in spring (March to May), higher than that of SGIV. In summer (June to August), SGIV had a detection rate of 19%, higher than that of NNV. The highest detection rates for SGIV and NNV were observed in autumn (September to November) at 58% and 40%, respectively, while the lowest rates were in winter (December to February) at 4% and 6%, respectively. Autumn also had the highest detection rate for bacterial pathogens, with V. harveyi, V. vulnificus, V. alginolyticus, V. parahaemolyticus, A. hydrophila and P. mermaid detected at rates of 32%, 6%, 9%, 15%, 6%, and 15%, respectively. V. harveyi was detected in diseased grouper across all seasons, while V. alginolyticus had high detection rate in summer, autumn and winter; V. vulnificus was mainly detected in spring and autumn; and V. parahaemolyticus and P. mermaid were detected in summer and autumn. In summary, diseases in cultured grouper in Guangxi are characterized by co-infections involving multiple pathogens, with complex and diverse co-infection patterns. Our findings provided a direction for exploring the pathogenic mechanisms of grouper pathogen co-infection, offering a theoretical basis for epidemic prevention and control, and shedding new light on aquatic pathogen co-infection research.